PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01012772001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ZF-HD
Protein Properties Length: 267aa    MW: 29539 Da    PI: 9.469
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01012772001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.36.6e-3264119357
        ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 
                        k rY+eC++NhAas+Ggha DGCgEfmps g   g+aa+l+CaACgCHRnFHRrev
  GSVIVT01012772001  64 KPRYRECMRNHAASIGGHASDGCGEFMPSGGGGgGDAASLTCAACGCHRNFHRREV 119
                        579**************************998889*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.5E-2866119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-2866119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.22367118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-1867118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.88E-17172239IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-28172239IPR009057Homeodomain-like
TIGRFAMsTIGR015652.7E-25179235IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSNVYHSFRA YCLNLSCDKL IKLIKIEYVV PYGRSAKMEV DDVEEDEAAE NKPMVMNPKA  60
TAVKPRYREC MRNHAASIGG HASDGCGEFM PSGGGGGGDA ASLTCAACGC HRNFHRREVP  120
GAAHLHHHLM HPGPPHAHPM LLYNTTPSPK NASVHALPHK FLGRGDVQIA TMMTTTKNKR  180
FRTKFTQEQK ERMLELAERL GWRIQKQDDV VLSQFCSELG IKRNVLKVWM HNNKNAHRRR  240
EPPPESPPPP PPPPPPSMAP PQAAGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-281792361875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4336760.0AM433676.2 Vitis vinifera contig VV78X101350.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665240.11e-137PREDICTED: zinc-finger homeodomain protein 2-like
RefseqXP_010665241.11e-137PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotQ9SB612e-54ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLF6GYS91e-137F6GYS9_VITVI; Putative uncharacterized protein
STRINGVIT_18s0117g00270.t011e-136(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-43homeobox protein 22